Source code for gadgit.post_run

def post_run(gene_info, ga_info, pop, stats, hof):
    """Takes in the results of some GA and displays information based
    on the problem definition.

    Must contain GeneName in dataframe.

    Parameters
    -------
    gene_info: GeneInfo class
    ga_info: GAInfo class
    pop: DEAP poplation from a succesful run
    stats: DEAP stats object
    hof: DEAP hall of fame object
    """

    if 'GeneName' not in gene_info.data_frame.columns:
        raise AttributeError('GeneNames column not found for post '
                             'processing script.')

    elite = hof[0]
    print('Size: ', len(elite))
    buf = 'Index in elite: '
    for ind in sorted(list(elite)):
        buf += str(ind) + ', '
    print(buf)
    buf = 'Genes in elite: '
    for ind in sorted(list(elite)):
        buf += gene_info.data_frame.loc[ind, 'GeneName'] + ', '
    print(buf)
    print('Nodes exloration count: ')
    print(gene_info.frontier)
    missed_nodes = [gene_info.data_frame.loc[ind, 'GeneName']
                    for ind, x in enumerate(gene_info.frontier) if x == 0]
    print('Nodes never explored (bad): N =', len(missed_nodes))
    print(', '.join(missed_nodes))
    print('Gene Info:')
    print(gene_info)
    print('GA Info')
    print(ga_info)
    print('Gene rankings including fixed genes:')
    rank_pair = zip(list(gene_info.data_frame['GeneName']), gene_info.frontier)
    rank_pair = sorted(rank_pair, reverse=True, key=lambda y: y[1])
    place_list = []
    current_place = 1
    last_element = rank_pair[0][1]
    for i, element in enumerate(rank_pair):
        if element[1] != last_element:
            current_place = i + 1
        last_element = element[1]
        place_list.append(current_place)
    print(list(zip([x[0] for x in rank_pair], place_list)))